Publications

Irene Stefanini:

ORCID: 0000-0002-5629-9174

  • Di Paola M., Rizzetto L., Stefanini I., Vitali F., Massi-Benedetti C., Tocci N., Romani L., Ramazzotti M., Lionetti P., De Filippo C., Cavalieri D. (2020) Comparative immunophenotyping of Saccharomyces cerevisiae and Candida spp. strains from Crohn’s disease patients and their interactions with the gut microbiome. Journal of Translational Autoimmunity. 3:100036. doi: 10.1016/j.jtauto.2020.100036.
  • Ramazzotti M., Stefanini I., Di Paola M., De Filippo C., Rizzetto L., Berná L., Dapporto L., Rivero D., Tocci N., Weil T., Lenucci M.S., Lionetti P., Cavalieri D. (2018) Population genomics reveals evolution and variation of Saccharomyces cerevisiae in the human and insects gut. Environ Microbiol. 21(1):50-71. doi: 10.1111/1462-2920.14422.

  • Stefanini I. and Cavalieri D. (2018) Metagenomic approaches to investigate the contribution of the vineyard environment to the quality of wine fermentation: potentials and difficulties. (review) Frontiers in Microbiology, 9:991. doi: 10.3389/fmicb.2018.00991.

  • Stefanini I., Rizzetto L., Rivero D., Carbonell S., Gut M., Heath S., Gut I.G., Trabocchi A., Guarna A., Ben Ghazzi N., Bowyer P., Kapushesky M., Cavalieri D. (2018) Deciphering the mechanism of action of 089, a compound impairing the fungal cell cycle. Scientific Reports, 8:5964. PMID: 29654251.

  • Stefanini I. (2018) Yeast-insects associations: it takes guts. (Review) Yeast 35:315-330. PMID: 29363168.

  • Stefanini I., Albanese A., Sordo M., Legras J-L., De Filippo C., Cavalieri D., Donati C. (2017) SaccharomycesIDentifier, SID: strain-level analysis of Saccharomyces cerevisiae populations by using microsatellite meta-patterns, Scientific Reports,7, Article number: 15343. doi:10.1038/s41598-017-15729-3

  • Khomenko I., Stefanini I., Cappellin L., Cappelletti V., Franceschi P., Cavalieri D., Märk T.D., Biasioli F. (2017) Non-invasive real time monitoring of yeast volatilome by PTR-ToF-MS, Metabolomics. 2017;13(10):118. PMID: 28932179.

  • Buschow S.I., Ramazzotti M., Reinieren-Beeren I.M.J., Heinzerling L.M., Westdorp H., Stefanini I., Beltrame L., Hato S.V., Ellebæk E., Gross S., Nguyen V.A., Weinlich G., Ragoussis J., Baban D., Schuler-Thurner B., Svane I.M., Romani N., Austyn J.M., De Vries I.J.M., Schuler G., Cavalieri D. and Figdor C.G. (2017) Survival of metastatic melanoma patients after dendritic cell vaccination correlates with expression of leukocyte phosphatidylethanolamine-binding protein 1 / Raf Kinase inhibitory protein, Oncotarget, 8:67439-67456. doi: 10.18632/oncotarget.18698.

  • Brilli M., Trabocchi A., Weil T., Cavalieri D., Stefanini I. (2017) Relations between effects and structure of small bicyclic molecules on the complex model system Saccharomyces cerevisiae, Front Pharmacol., PMID: 28424620.

  • Stefanini I., Carlin S., Tocci N., Albanese D., Donati C., Franceschi P., Paris M., Zenato A., Tempesta S., Bronzato A., Vrhovsek U., Mattivi F., Cavalieri D. (2017) Core microbiota and metabolome of Vitis vinifera L. cv. Corvina grapes and musts, Front Microbiol., Front. Microbiol. PMID: 28377754.

  • Qvirist L.A., De Filippo C., Strati F., Stefanini I., Sordo M., Andlid T., Felis G.E., Mattarelli P., Cavalieri D. (2016) Isolation, identification and characterization of yeasts from fermented goat milk of the Yaghnob Valley in Tajikistan, Front Microbiol., 7:1690. PMID:27857705.

  • Strati F., Di Paola M., Stefanini I., Albanese D., Rizzetto L., Lionetti P., Calabrò A., Jousson O., Donati C., Cavalieri D., De Filippo C. (2016) Age and Gender Affect the Composition of Fungal Population of the Human Gastrointestinal Tract, Front Microbiol., 7:1227. PMID: 27536299.

  • Strati F., Cavalieri D., Albanese D., De Felice C., Donati C., Hayek J., Jousson O., Leoncini S., Pindo M., Renzi D., Rizzetto L., Stefanini I., Calabrò A., De Filippo C. (2016) Altered gut microbiota in Rett syndrome. Microbiome.; 4(1):41. PMID: 27473171.

  • Dapporto L., Stefanini I., Rivero D., Polsinelli M., Capretti P., De Marchi P., Viola R., Turillazzi S., Cavalieri D. (2016) Social Wasp intestines host the local phenotypic variability of Saccharomyces cerevisiae strains, Yeast, 33(7):277-87. PMID: 27168222.

  • Stefanini I., Dapporto L., Berná L., Polsinelli M., Turillazzi S., Cavalieri D. (2016) Social wasps are Saccharomyces mating nest, Proc Natl Acad Sci U S A. 113(8):2247-51. PMID: 26787874.

  • Stefanini I., Albanese D., Cavazza A., Franciosi E., De Filippo C., Donati C., Cavalieri D. (2016) Dynamic changes in microbiota and mycobiota during spontaneous “Vino Santo Trentino” fermentation. Microbial Biotechnology, 9(2): 195-208. PMID: 26780037.

  • Rivero D., Berná L., Stefanini I., Baruffini E., Bergerat A., Csikász-Nagy A., De Filippo C., Cavalieri D. (2015) Hsp12p and PAU genes are involved in ecological interactions between natural yeast strains. Environ Microbiol. 17: 3069-3081., PMID: 26079802.

  • De Filippo C. , Di Paola M., Stefanini I., Rizzetto L., Berná L., Ramazzotti M., Dapporto L., Rivero D., Gut I.G., Gut M., Bayés M., Legras J.L., Viola R., Massi-Benedetti C., De Luca A., Romani L., Lionetti P., Cavalieri D. (2014) Population genomics of Saccharomyces cerevisiae human isolates: passengers, colonizers, invaders. BioRxiv.

  • Stefanini I., Dapporto L., Legras J-L., Calabretta A., Di Paola M., De Filippo C., Viola R., Capretti P., Polsinelli M., Turillazzi S., Cavalieri D. (2012) Role of social wasps in Saccharomyces cerevisiae ecology and evolution. Proc Natl Acad Sci U S A.; 109(33):13398-403. doi: 10.1073/pnas.1208362109. Epub 2012 Jul 30. PMID: 22847440.

  • Ramazzotti M., Berná L., Stefanini I., Cavalieri D. (2012) A computational pipeline to discover highly phylogenetically informative genes in sequenced genomes: application to Saccharomyces cerevisiae natural strains. Nucleic Acids Res.; 40(9):3834-48. PMID: 22266652.

  • Trabocchi A., Stefanini I., Morvillo M., Ciofi L., Cavalieri D., Guarna A. (2010) Chemical genetics approach to identify new small molecule modulators of cell growth by phenotypic screening of Saccharomyces cerevisiae strains with a library of morpholine-derived compounds. Org Biomol Chem; 8(24):5552-7. PMID: 20949215.

  • Cavalieri D., Rivero D., Beltrame L., Buschow S.I., Calura E., Rizzetto L., Gessani S., Gauzzi M.C., Reith W., Baur A., Bonaiuti R., Brandizi M., De Filippo C., D’Oro U., Draghici S., Dunand-Sauthier I., Gatti E., Granucci F., Gündel M., Kramer M., Kuka M., Lanyi A., Melief C.J., van Montfoort N., Ostuni R., Pierre P., Popovici R., Rajnavolgyi E., Schierer S., Schuler G., Soumelis V., Splendiani A., Stefanini I., Torcia M.G., Zanoni I., Zollinger R., Figdor C.G., Austyn J.M. (2010) DC-ATLAS: a systems biology resource to dissect receptor specific signal transduction in dendritic cells. Immunome Res.;6:10. PMID: 21092113.

  • Stefanini I., Trabocchi A., Marchi E., Guarna A., Cavalieri D. (2010) A systems biology approach to dissection of the effects of small bicyclic peptidomimetics on a panel of Saccharomyces cerevisiae mutants; J Biol Chem.; 285(30):23477-85, PMID: 20501664.

  • De Filippo C., Pini-Prato A., Mattioli G., Avanzini S., Rapuzzi G., Cavalieri D., Di Paola M., Stefanini I., Ceccherini I., Mavilio D., Lionetti P., Jasonni V. (2010) Genomics approach to the analysis of bacterial communities dynamics in Hirschsprung’s disease-associated enterocolitis: a pilot study. Pediatric Surgery International; 26: 465-471, PMID: 20306059.